Useful softwares used in GWA studies.
https://www.stats.ox.ac.uk/~marchini/software/gwas/gwas.html
The software included are listed bellow
IMPUTE a program for genotype imputation in genome-wide association studies and fine-mapping
studies based on a dense set of marker data (such as HapMap) [2,5]
v1.0.0
v2.1.0
19-07-2009
20-01-2010
SNPTEST a program for Frequentist and Bayesian tests of SNP association with binary (case-control)
and quantitative phenotypes that takes genotype uncertainty into account [2]
v2.1.0
20-03-2010
a program to simulate case control datasets at linked SNP markers conditional upon a set
of known haplotypes [4]
v1.3.0
17-01-2008
a program to carryout meta-analysis of genetic studies.
v1.0.0
12-10-2009
a program for location and detection of unobserved causal loci in fine-mapping experiments
and genome-wide association studies.
v1.0.0
19-03-2010
CHIAMO
a genotype calling algorithm for multi-cohort studies [1]
v0.2.1
22-10-2007
a program for (a) generating subsets of genotype data, and (b) converting genotype data
between the PED file format and the FILE FORMAT used by SNPTEST and IMPUTE.
v0.6.0
07-07-2009
Homepage of the auther.
